PANDIT
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Text from the NAR 2007 Database Issue (Database Summaries) by permission of Oxford University Press.
- Galperin MY. The Molecular Biology Database Collection: 2007 update. Nucl. Acids Res. 2007. 35: D3-D4; doi:10.1093/nar/gkl1008. http://nar.oxfordjournals.org/cgi/content/abstract/35/suppl_1/D3
PANDIT is NAR Database No. 608.
Contents |
Database Description
PANDIT is a collection of multiple sequence alignments and phylogenetic trees covering many common protein domains. It contains the seed protein sequence alignments from the Pfam-A (curated families) database; nucleotide sequence alignments derived from sequences available for the above and using the protein alignments as 'templates'; protein sequence alignments restricted to the family members for which nucleotide sequences are available; and inferred phylogenetic trees for each alignment.
References
- Whelan, S., P.I.W. de Bakker, N. Goldman. (2003). Pandit: a database of protein and associated nucleotide domains with inferred trees. Bioinformatics 19:1556-1563. <a href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12912837">http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12912837</a>
Authors
- Missing
External Links
- PANDIT homepage
- PANDIT abstract in the NAR 2006 Database Issue
Contact Email
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