Help:Related/old content

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Note: This page is currently beta! Re-researching and re-writing this page is high on the TODO list - (ongoing). It is vital that we properly organize and reference the body of similar work so that we can most easily gain the most value from that work.

Contents

[edit] Related Resources (in no particular order)

This list of links requires organization, but is none the less included as is for reference. Please support MetaBase by adding content!


[edit] Projects with a similar philosophy

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The Bio Community Cluster 
Here is a description of BiO.CC, BioWiki and its sister sites. See also the detailed section below.
The Molecular and Cellular Biology 'WikiProject' 
This project aims to better organize information in articles related to molecular and cell biology on Wikipedia. Some pages relevant to the MetaBase project include;
The WikiData project 
A proposed wiki-like database for various types of structured content. See also the OmegaWiki project and WikiProteins.
EcoliWiki 
The goal for EcoliWiki is to generate community-based pages about everything related to E. coli K-12, its phages, plasmids, and mobile genetic elements. Of particular interest is the Database category of the wiki. See the internal link.
WikiOmics 
A collection of questions and answers about bioinformatics funded by the Godzik lab at the Burnham Institute for Medical Research in San Diego. See the internal link.
MyBio 
MyBio.net is a community-built directory of tools, databases, protocols and other web resources for life sciences researchers in a wiki format which everyone can edit! See the internal link.
OpenWetWare 
an effort to promote the sharing of information, know-how, and wisdom among researchers and groups who are working in biology & biological engineering. More
WikiPathways 
an open, public platform dedicated to the curation of biological pathways by and for the scientific community.
The Open Bioinformatics Foundation 
non profit, volunteer run organization focused on supporting open source programming in bioinformatics.

[edit] Other bioinformatics database & resource lists

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Biomed Cetral Databases 
Oh yes! http://databases.biomedcentral.com/ http://databases.biomedcentral.com/home


The Health Sciences Library System (HSLS) Online Bioinformatics Resources Collection (OBRC) 
The Online Bioinformatics Resources Collection (OBRC) contains annotations and links for 1746 bioinformatics databases and software tools. See the internal link.
The Bioinformatics Links Directory 
Features curated links to molecular resources, tools and databases. See the internal link.
The Molecular Biology Database Collection 
A public on-line resource that lists the databases described in Nucleic Acids Research, together with other databases of value to the biologist. See the internal link.
CABRI 
Common Access to Biotechnological Resources and Information - an online service where users can search a number of European Biological Resource Centre catalogues. The catalogues may be searched independently, or as one, and the located materials ordered online or by post. See the internal link.
MetaBasis 
(Not to be confused with MetaBase!) - A database system for the effective management of metadata concerning software tools and databases in the field of Bioinformatics. See the internal link.
The DBD: Database of Biological Database 
Consists of 1200 Database entries covering wide range of databases useful for biological researchers. See the internal link.
The DoD: Database of Databases 
Links to all molecular biology databases that appear in the Nucleic Acids Research database issue. See the internal link.
BioWareDB.org 
Is an attempt to collect an exhaustive database of links to the vast amounts of freely available and commercial bioinformatics software. See the internal link, or link directly to the homepage.


[edit] See also;

The following dynamically generated list of MetaBase resources in the 'database of databases' category.

BioWareDB.org | Bioinformatics Links Directory | CABRI Common Access to Biological Resources and Information | DBD: Database of Biological / Bioinformatics Databases | DoD: Database of Databases | MetaBase | Molecular Biology Database Collection | NIST | OBRC: Online Bioinformatics Resources Collection | The Database Issue of Nucleic Acids Research

[edit] Other interesting projects

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OReFiL 
an Online Resource Finder for Lifesciences. See the internal link.
The Database of Databases of Biology Databases 
There are biology databases. And then there databases of biology databases. This is a database of those database of biology databases! (A meta-meta-database!)
ChemXtreme : Harvesting Chemical Information from the Internet Using a Distributed Approach: ChemXtreme.


[edit] Rough Notes

[edit] Important projects

[edit] Things to classify

[edit] Open Chemistry

[edit] Others

Other MetaBase ideas / existing technology / Database Databases and resources (in no particular order);

[edit] Other (new (to sort))

[edit] Other (old (to sort))

  • Commercial GeneGo MetaBase™ : Arguably, the most comprehensive manually curated database of mammalian biology and medicinal chemistry data available today. http://www.genego.com/metabase.php

[edit] Google?

[edit] Literature

Links to literature relating to MetaBase

Time to Organize the Bioinformatics Resourceome [1] 
"We suggest that the full set of bioinformatics resources - the "resourceome" should be explicitly characterized and organized. A hierarchical and machine-understandable organization of the field, along with rich cross-links (an ontology!) would be a useful start. It is likely that a distributed development approach would be required so that those with focused expertise can classify resources in their area, while providing the metadata that would allow easier access to useful existing resources."
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