FESD - Functional Element SNPs Database
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Contents |
NAR Database text
- Galperin MY. The Molecular Biology Database Collection: 2007 update. Nucl. Acids Res. 2007. 35: D3-D4; doi:10.1093/nar/gkl1008. http://nar.oxfordjournals.org/cgi/content/abstract/35/suppl_1/D3
FESD - Functional Element SNPs Database is NAR Database No. 669.
Database Description
SNPs located within promoters, UTRs, etc., of human genes
Authors
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External Links
Contact Email
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User contributed text
FESD is a web-based wp:integrated database for selecting sets of wp:SNPs in putative functional elements in human genes.
It provides sets of SNPs located in 10 different functional elements; promoter regions, wp:CpG islands, wp:5'UTRs (untranslated regions), translation start sites, splice sites, coding exons, introns, translation stop sites, poly adenylation signals (PASes), and wp:3'UTRs.
In addition, users can get the flanking sequences of SNPs for genotyping experiments through our web interface.
Source Data
- UCSC GoldenPath: hg17 (May, 2004)
- http://hgdownload.cse.ucsc.edu/downloads.html#human NCBI dbSNP: ftp Build 124 (JAN 09, 2005)
- http://www.ncbi.nlm.nih.gov/SNP/ TRANSFAC: Professional 8.4
- http://www.biobase.de/pages/products/transfac.html OMIM: morbidmap, genemap (Oct 04, 2004)
- http://www.ncbi.nlm.nih.gov/Omim/omimfaq.html#download Erpin: version 4.0 (linux binaries)
- http://tagc.univ-mrs.fr/erpin/
Contact
National Genome Information Center (KRIBB) 52 Eoeun-dong, Yuseong-gu, Daejeon 305-333, Korea
- Tel) 82-42-879-8533
- Fax) 82-42-879-8519
- E-mail) hjkang@kribb.re.kr
Paper
Hyo Jin Kang, Kyoung Oak Choi, Byung-Dong Kim, Sangsoo Kim and Young Joo Kim. FESD: a Functional Element SNPs Database in human, Nucleic Acids Research, 2005, Vol. 33, Database issue D518-D522
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